Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs75670342 | chr2:70481171 | G/A | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs75673409 | chr3:39103375 | G/T | 0.000164 | 177 | 15.27 | 16.13 | 7.47 | KM Plot |
| PAAD | rs75679901 | chr1:227512080 | G/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs7571106 | chr2:70538529 | T/C | 0 | 172 | 15.42 | 17.23 | 1.03 | KM Plot |
| PAAD | rs75714085 | chr1:227325816 | C/A | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs75714930 | chr1:227318676 | T/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs75767425 | chr1:227577520 | C/T | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs75790780 | chr1:227569460 | C/T | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs75794807 | chr8:140841927 | A/G | 1.42E-7 | 173 | 15.37 | 15.67 | 3.17 | KM Plot |
| PAAD | rs75813302 | chr1:227572370 | A/T | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs7581651 | chr2:70462243 | A/T | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs7585058 | chr2:70487312 | T/C | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs7585200 | chr2:128468369 | C/G | 9.11E-10 | 177 | 15.67 | 12.6 | 2.2 | KM Plot |
| PAAD | rs7587356 | chr2:146093594 | A/C | 9.29E-8 | 178 | 15.67 | 14.18 | 3.17 | KM Plot |
| PAAD | rs7587496 | chr2:238387632 | A/G | 1.86E-5 | 174 | 15.27 | 19.47 | 5.23 | KM Plot |